Information for 1-GGGCACAGTTACC (Motif 2)

C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C
Reverse Opposite:
A C T G A C T G G A C T C T G A C T G A G T A C C A G T A T C G C A G T A C T G A G T C A G T C G T A C
p-value:1e-12
log p-value:-2.908e+01
Information Content per bp:1.797
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif15.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets65.2 +/- 23.0bp
Average Position of motif in Background52.6 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGCACAGTTACC--
GGTCANNGTGACCTN
 C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGGCACAGTTACC-
AGGNCANNGTGACCT
 A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGGCACAGTTACC---
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGGCACAGTTACC
NGTGGGCAT-------
 A C G T A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGCACAGTTACC--
AAGGTCACGGTGACCTG
 A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GGGCACAGTTACC
NNNNTTGGGCACNNCN---
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGGCACAGTTACC---
TGACCCAGTGACCTAC
 C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGCACAGTTACC
CCAGGAACAG-----
 A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGGCACAGTTACC
TNNGGGCAG-------
 A C G T A C G T A C G T C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGCACAGTTACC--
TACCCTAGTTACCGA
 C A T G A C T G C T A G A G T C G C T A A T G C G C T A A C T G A G C T A G C T C T G A G T A C A G T C A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A