Information for 4-CGGGCAGCAGGGG (Motif 5)

A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G
Reverse Opposite:
A T G C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A G T C A G T C A G T C A T C G
p-value:1e-12
log p-value:-2.953e+01
Information Content per bp:1.913
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.3 +/- 17.6bp
Average Position of motif in Background65.7 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGGGCAGCAGGGG---
-DCHCAGCAGGRGGCC
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGGGCAGCAGGGG-
--CACAGCAGGGGG
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGGGCAGCAGGGG-
CCACACAGCAGGAGA
 A C G T A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGGCAGCAGGGG---
-NCGCAGCGGGGGGTC
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGGGCAGCAGGGG-
CCACACAGCAGGAGA
 A C G T A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGGCAGCAGGGG---
--CACAGCGGGGGGTC
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGGGCAGCAGGGG---
-NCNCAGCGGGGGGTC
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGGGCAGCAGGGG-
-ATGCAACAGGTGG
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGGCAGCAGGGG------
TGGCCACCAGGGGGCGCTA
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

SCRT1/MA0743.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGGGCAGCAGGGG---
-GAGCAACAGGTGGTT
 A T G C C T A G A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A T C G A C G T A C G T A C G T
A C G T T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T