Information for 7-GAAGCCCTTA (Motif 20)

A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A
Reverse Opposite:
G C A T T C G A C G T A A C T G T C A G C T A G A G T C A G C T A C G T A G T C
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.872
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif122.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets29.4 +/- 22.6bp
Average Position of motif in Background53.4 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCCCTTA
NGAAGC-----
 A C G T A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAAGCCCTTA-
-AAGCACTTAA
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAAGCCCTTA--
AGGGAAGTCATTTCT
 A C G T A C G T A C G T A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAAGCCCTTA---
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAAGCCCTTA-
-AASCACTCAA
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAAGCCCTTA-
-AAACMATTAN
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAAGCCCTTA--
--TGACCTTGAN
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAAGCCCTTA-
---BCMATTAG
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAAGCCCTTA----
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAAGCCCTTA
BNTGDCCTTG
 A C T G C G T A C T G A A C T G A G T C A G T C A G T C A C G T A G C T C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G