Information for 9-CCTGGCCCTTGAT (Motif 13)

A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
Reverse Opposite:
C G T A A C G T A T G C G T C A C G T A A C T G A C T G A C T G G T A C G T A C C G T A A C T G A T C G
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.7 +/- 25.1bp
Average Position of motif in Background48.0 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT
-CTGACCTTTG--
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT
-CTGTTCCTGG--
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT
BNTGDCCTTG---
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGCCCTTGAT-
NNNNTGACCTTTNNNN
 A C G T A C G T A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGCCCTTGAT
CNNTTGACCTTTG--
 A C G T A C G T A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGCCCTTGAT-
NNNGTGACCTTTGNNN
 A C G T A C G T A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT
--TGACCYCT---
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT
--TGACCT-----
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTGGCCCTTGAT
GCTGTG-------
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCTGGCCCTTGAT----
--TGWCCTCARNTGACC
 A T G C A G T C A C G T A C T G C A T G A G T C A G T C A G T C A C G T A C G T A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C