Information for 1-CGCCCCCTGGCGG (Motif 1)

A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G
Reverse Opposite:
A T G C A T G C C T A G A T G C A G T C G C T A A C T G A C T G A T C G C T A G A C T G A T G C C T A G
p-value:1e-15
log p-value:-3.665e+01
Information Content per bp:1.741
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif112.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets49.9 +/- 19.7bp
Average Position of motif in Background44.1 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.83
Offset:-6
Orientation:forward strand
Alignment:------CGCCCCCTGGCGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCCCTGGCGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCCCTGGCGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CGCCCCCTGGCGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGCCCCCTGGCGG
CGCCCCCTGACA-
 A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGCGG
TGCCCCCGGGCA-
 A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGCGG-
CACCCCCGGGGGGG
 A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGCGG--
CCCCCCCGGGGGGGT
 A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCCCCTGGCGG
NTGCCCTTGGGCGN
 A C G T A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGCGG--
CCCCCCCGGGGGGGT
 A G T C A T C G G T A C G A T C T A G C T A G C G T A C C G A T C T A G A T C G G A T C A T C G T A C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T