Information for 12-TTCCCAGTGTTCA (Motif 21)

A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A C G T A A G T C C G T A A G T C A G C T A C T G A C T G A C T G C G T A C T G A
p-value:1e-6
log p-value:-1.390e+01
Information Content per bp:1.937
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 29.0bp
Average Position of motif in Background39.2 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTCCCAGTGTTCA
--NCCATTGTTC-
 A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTCCCAGTGTTCA--
TGTTCCCATTGTGTACT
 A C G T A C G T A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTCCCAGTGTTCA
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTCCCAGTGTTCA----
CGAACAGTGCTCACTAT
 A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTCCCAGTGTTCA
TGCCCAGNHW---
 A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TTCCCAGTGTTCA
---CCATTGTTC-
 A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Vdr/MA0693.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTCCCAGTGTTCA
GAGTTCATTGAGTTCA
 A C G T A C G T A C G T A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTCCCAGTGTTCA
ATTTCCCAGVAKSCY
 A C G T A C G T A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTCCCAGTGTTCA
---CCATTGTTYB
 A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTCCCAGTGTTCA
HTTTCCCASG-----
 A C G T A C G T A G C T A C G T A G T C A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A G T C C G T A
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T A C G T