Information for 1-CGTCMSCATCCGCAGC (Motif 3)

G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G G T A C C A T G A T C G T G C A C G A T A C T G A T C G A C T G A C T G G T C A A G T C A C T G
p-value:1e-13
log p-value:-3.023e+01
Information Content per bp:1.807
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.7 +/- 27.8bp
Average Position of motif in Background58.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.55
Offset:12
Orientation:forward strand
Alignment:CGTCMSCATCCGCAGC-
------------CAGCC
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CGTCMSCATCCGCAGC
CAACGTCCGCGG-------
 A C G T A C G T A C G T G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:CGTCMSCATCCGCAGC
----------CACAGN
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CGTCMSCATCCGCAGC
TGAGTCAGCA--------
 A C G T A C G T G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CGTCMSCATCCGCAGC-------
------NNNNAGCAGCTGCTGAN
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.50
Offset:10
Orientation:forward strand
Alignment:CGTCMSCATCCGCAGC----
----------CGCAGCTGCG
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CGTCMSCATCCGCAGC---
---------CAGCAGCTGN
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CGTCMSCATCCGCAGC----
---------NNGCAGCTGTC
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGTCMSCATCCGCAGC
ACGTCA-----------
 A C G T G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CGTCMSCATCCGCAGC----
--------NNAGCAGCTGCT
 G T A C A C T G A C G T A G T C G T A C T A G C G T A C G C T A A C G T A T G C G T A C A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T