Information for 4-GTGGAGYGSC (Motif 20)

A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
Reverse Opposite:
C T A G A T C G A T G C T C A G G T A C A C G T A G T C T A G C G T C A A T G C
p-value:1e-7
log p-value:-1.787e+01
Information Content per bp:1.706
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif353.0
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets49.1 +/- 21.8bp
Average Position of motif in Background49.1 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTGGAGYGSC
BTBRAGTGSN
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTGGAGYGSC-
-TTGAGTGSTT
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTGGAGYGSC
CTYRAGTGSY
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTGGAGYGSC-
CTTGAGTGGCT
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGGAGYGSC
GTGGAT----
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTGGAGYGSC
NTCAAGTGG-
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTGGAGYGSC-
-TTRAGTGSYK
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTGGAGYGSC
NTCAAGTGGN
 A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGGAGYGSC---
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTGGAGYGSC---
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A T C G C A G T A T C G C T A G G T C A A C T G A G T C A T C G A T G C G A T C A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T