Information for 1-GCCTGCCCGY (Motif 1)

A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
Reverse Opposite:
C T A G A T G C T C A G C T A G C A T G T G A C C G T A A T C G T C A G T G A C
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.588
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif925.8
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets51.0 +/- 27.2bp
Average Position of motif in Background50.2 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCTGCCCGY-
--CTGCCCGCA
 A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C A C G T
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCTGCCCGY---
---TTCCCGCCWG
 A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G

E2F4/MA0470.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCTGCCCGY--
-NNTTCCCGCCC
 A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C A C G T A C G T
A C G T A G T C A G T C A G C T A G C T A T G C A T G C A G T C A C T G A T G C A T G C T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGCCCGY-
TGTCTGDCACCT
 A C G T A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTGCCCGY
TWGTCTGV----
 A C G T A C G T A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTGCCCGY-
CTGTCTGTCACCT
 A C G T A C G T A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCCTGCCCGY
VBSYGTCTGG----
 A C G T A C G T A C G T A C G T A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCCTGCCCGY
--CTTCCGGT
 A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
A C G T A C G T A G T C C G A T G A C T G A T C G T A C A C T G A T C G G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCTGCCCGY
-GCTGTG---
 A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCTGCCCGY
CTGTCTGG----
 A C G T A C G T A C T G A G T C A T G C C G A T A C T G G T A C G A T C A G T C A T C G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T