Information for 9-CATAACAAAG (Motif 18)

T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G
Reverse Opposite:
T A G C G C A T A G C T G A C T T A C G G A C T A G C T G T C A C G A T A T C G
p-value:1e-7
log p-value:-1.716e+01
Information Content per bp:1.557
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif12.81%
Number of Background Sequences with motif3508.7
Percentage of Background Sequences with motif7.36%
Average Position of motif in Targets49.0 +/- 26.7bp
Average Position of motif in Background49.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CATAACAAAG--
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CATAACAAAG-----
ATAAGAACAAAGGACTA
 A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CATAACAAAG
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CATAACAAAG-----
AGAAGAACAAAGGACTA
 A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CATAACAAAG--
AAAAATAACAAACGG
 A C G T A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CATAACAAAG-
-AAAACAAAGG
 T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CATAACAAAG-
-VRRACAAWGG
 T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CATAACAAAG-
-RNAACAATGG
 T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CATAACAAAG
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:CATAACAAAG
----ACAAAG
 T A G C G C T A C A G T T C G A C T G A A T G C C T G A T C G A C G T A A T C G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G