Information for 2-CGCGTCTCTA (Motif 6)

A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A
Reverse Opposite:
G A C T C G T A C T A G C G T A A C T G C G T A G T A C A T C G A G T C A C T G
p-value:1e-13
log p-value:-3.024e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 25.4bp
Average Position of motif in Background67.9 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGCGTCTCTA---
-AGGTCTCTAACC
 A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T A C G T A C G T
A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGCGTCTCTA-----
NTNNCGTATCCAAGTNN
 A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGCGTCTCTA
VBSYGTCTGG-
 A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCGTCTCTA-
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

HEY2/MA0649.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGCGTCTCTA
GGCACGTGNC--
 A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGCGTCTCTA---
GGNGCGNCTGTTNNN
 A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGCGTCTCTA
TGCGTG----
 A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CGCGTCTCTA-
ANCGCGCGCCCTTNN
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CGCGTCTCTA
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

Hes2/MA0616.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGCGTCTCTA--
GCACGTGTCNNNN
 A C G T A G T C A C T G A T G C A C T G A C G T A G T C A C G T A G T C G A C T C G T A A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A