Information for 20-GGAGCGCCGGGACAAG (Motif 48)

A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
Reverse Opposite:
A G T C G A C T A C G T A C T G A G C T A T G C A G T C A G T C A C T G A T C G A T G C A C T G A G T C A G C T A G T C A T G C
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.886
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 27.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGAGCGCCGGGACAAG--
--AGAGCGGGGTCAAGTA
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G A C G T A C G T
A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGAGCGCCGGGACAAG--
--CGCGCCGGGTCACGTA
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G A C G T A C G T
A C G T A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

SP2/MA0516.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCGGGACAAG
GGGNGGGGGCGGGGC---
 A C G T A C G T A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCGGGACAAG
NAGANTGGCGGGGNGNA
 A C G T A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGAGCGCCGGGACAAG
--GGGGGCGGGGCC--
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCGGGACAAG
CGGAGC-----------
 A C G T A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAGCGCCGGGACAAG-
---ATGCCCGGGCATGT
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G A C G T
A C G T A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGAGCGCCGGGACAAG
----TGGCGGGAAAHB
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
A C G T A C G T A C G T A C G T C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

SP1/MA0079.3/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGAGCGCCGGGACAAG
--GGGGGCGGGGC---
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GGAGCGCCGGGACAAG
---GCGCCTGCGCA--
 A T C G A C T G C T G A A C T G A G T C A T C G A T G C A G T C A C T G A C T G A T C G C T G A A G T C G T C A C G T A A C T G
A C G T A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T