Information for 15-GCCGCACGCA (Motif 43)

A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A
Reverse Opposite:
G C A T A T C G G T A C A T C G A C G T A C T G G T A C C T A G A T C G T A G C
p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.737
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif3.95%
Number of Background Sequences with motif136.5
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets49.2 +/- 26.2bp
Average Position of motif in Background48.9 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCCGCACGCA-
-TBGCACGCAA
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:GCCGCACGCA
----CACGCA
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCGCACGCA
GCCACACCCA
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCCGCACGCA-
---GCACGTAY
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCCGCACGCA
--BGCACGTA
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCGCACGCA-
GGCCACACCCAN
 A C G T A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCCGCACGCA-
---GCACGTNC
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCGCACGCA-----
AGCGGCACACACGCAA
 A C G T A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Klf1/MA0493.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCGCACGCA
GGCCACACCCA
 A C G T A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCCGCACGCA---
---GCACGTACCC
 A T C G A T G C A G T C A C T G A G T C T G C A T A G C C A T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C