Information for 2-CACAACAAAC (Motif 6)

A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C
Reverse Opposite:
C T A G C G A T A G C T A C G T C T A G A C G T C G A T A C T G A C G T A C T G
p-value:1e-11
log p-value:-2.755e+01
Information Content per bp:1.867
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif111.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets43.0 +/- 22.6bp
Average Position of motif in Background47.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CACAACAAAC-
ATGTCACAACAACAC
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CACAACAAAC--
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CACAACAAAC
---AACAAT-
 A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CACAACAAAC--
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0032.1_IRC900814_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CACAACAAAC---
ATTTACGACAAATAGC
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CACAACAAAC
CAAACAACAACACCT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CACAACAAAC-
-RNAACAATGG
 A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CACAACAAAC-
NTTNAGAACAATTA
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CACAACAAAC
--NAACAAT-
 A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACAACAAAC
NWAACCACADNN
 A C G T A C G T A G T C C G T A A G T C C G T A G T C A G A T C C G T A C T G A C G T A A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C