Information for 1-AGGGAATTAGTGG (Motif 1)

C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
Reverse Opposite:
G T A C A G T C C T G A G A T C A C G T G T C A C G T A A C G T A C G T A G T C A G T C A G T C A C G T
p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.838
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 19.3bp
Average Position of motif in Background51.3 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATTAGTGG
AAGAGGATTAG---
 A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGGAATTAGTGG
AGGGTAACAGC--
 C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGGAATTAGTGG
----AATTAGTG-
 C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
A C G T A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATTAGTGG--
AGGGGGATTAGCTGCC
 A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGGGAATTAGTGG
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATTAGTGG--
NNAAGGGATTAACGANT
 A C G T A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTAGTGG
-GGGAATTGTAGT
 C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTAGTGG
-NNGGATTAGN--
 C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATTAGTGG--
ANCGCTAATTAGCGGTN
 A C G T A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0050.1_Hoxa3/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGGGAATTAGTGG
TTGAGGTAATTAGT--
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G G T C A G T C A C G A T A C G T G T C A C A T G A G C T A C T G A C T G
C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T A C G T A C G T