Information for 4-AGTGCACTCA (Motif 19)

G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A
Reverse Opposite:
G C A T T A C G C G T A A C T G C A G T T A C G A T G C T G C A A T G C C G A T
p-value:1e-7
log p-value:-1.726e+01
Information Content per bp:1.659
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif7.74%
Number of Background Sequences with motif1839.8
Percentage of Background Sequences with motif3.87%
Average Position of motif in Targets52.9 +/- 28.4bp
Average Position of motif in Background49.5 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AGTGCACTCA---
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGTGCACTCA--
-AGCCACTCAAG
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGTGCACTCA-
-AASCACTCAA
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PB0026.1_Gm397_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGTGCACTCA---
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGTGCACTCA--
--NSCACTYVAV
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGTGCACTCA-
-AAGCACTTAA
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTGCACTCA--
RGGGCACTAACY
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGTGCACTCA--
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A C G T G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGTGCACTCA-
-MRSCACTYAA
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGTGCACTCA-
---GCACTTAA
 G C T A T A C G A C G T T A C G A T G C G T C A T G A C G C A T A T G C C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A