Information for 11-GAAAGCCACTCGC (Motif 17)

A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G G T A C C T A G C G T A A C T G A C G T A C T G A T C G A T G C A C G T A G C T A C G T A G T C
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 17.7bp
Average Position of motif in Background55.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAAAGCCACTCGC----
-TAAGCCACTTGAAATT
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAAAGCCACTCGC----
-TAAGCCACTTGAAATT
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAAAGCCACTCGC
---MRSCACTYAA
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAAAGCCACTCGC----
-TAAGCCACTTGAATTT
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAAGCCACTCGC-----
-ATAACCACTTGAAAATT
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAAAGCCACTCGC
---AASCACTCAA
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAAAGCCACTCGC----
-TAAGCCACTTAACATT
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GAAAGCCACTCGC-
-----CCACTTGAA
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAAAGCCACTCGC--
---GGCCACRCCCMK
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAAAGCCACTCGC
---AGCCAATCGG
 A C T G C G T A C T G A C G T A A T C G A T G C A G T C C G T A A G T C A C G T A G T C A C T G A G T C
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G