Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-12 | -2.974e+01 | 0.0000 | 32.0 | 3.44% | 168.0 | 0.66% | motif file (matrix) |
svg |
2 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-9 | -2.121e+01 | 0.0000 | 197.0 | 21.16% | 3492.2 | 13.81% | motif file (matrix) |
svg |
3 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.989e+01 | 0.0000 | 55.0 | 5.91% | 607.8 | 2.40% | motif file (matrix) |
svg |
4 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-8 | -1.922e+01 | 0.0000 | 48.0 | 5.16% | 501.2 | 1.98% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-8 | -1.892e+01 | 0.0000 | 96.0 | 10.31% | 1398.1 | 5.53% | motif file (matrix) |
svg |
6 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-8 | -1.880e+01 | 0.0000 | 57.0 | 6.12% | 662.7 | 2.62% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.852e+01 | 0.0000 | 73.0 | 7.84% | 960.7 | 3.80% | motif file (matrix) |
svg |
8 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-7 | -1.742e+01 | 0.0000 | 19.0 | 2.04% | 105.9 | 0.42% | motif file (matrix) |
svg |
9 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-7 | -1.714e+01 | 0.0000 | 91.0 | 9.77% | 1350.4 | 5.34% | motif file (matrix) |
svg |
10 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.676e+01 | 0.0000 | 73.0 | 7.84% | 1004.4 | 3.97% | motif file (matrix) |
svg |
11 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.628e+01 | 0.0000 | 228.0 | 24.49% | 4457.0 | 17.62% | motif file (matrix) |
svg |
12 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.624e+01 | 0.0000 | 46.0 | 4.94% | 519.0 | 2.05% | motif file (matrix) |
svg |
13 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.623e+01 | 0.0000 | 59.0 | 6.34% | 752.2 | 2.97% | motif file (matrix) |
svg |
14 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-7 | -1.613e+01 | 0.0000 | 42.0 | 4.51% | 453.0 | 1.79% | motif file (matrix) |
svg |
15 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-6 | -1.602e+01 | 0.0000 | 150.0 | 16.11% | 2658.3 | 10.51% | motif file (matrix) |
svg |
16 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.601e+01 | 0.0000 | 53.0 | 5.69% | 647.1 | 2.56% | motif file (matrix) |
svg |
17 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.601e+01 | 0.0000 | 57.0 | 6.12% | 720.1 | 2.85% | motif file (matrix) |
svg |
18 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.592e+01 | 0.0000 | 54.0 | 5.80% | 667.7 | 2.64% | motif file (matrix) |
svg |
19 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-6 | -1.561e+01 | 0.0000 | 57.0 | 6.12% | 729.4 | 2.88% | motif file (matrix) |
svg |
20 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.547e+01 | 0.0000 | 106.0 | 11.39% | 1717.7 | 6.79% | motif file (matrix) |
svg |
21 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-6 | -1.539e+01 | 0.0000 | 153.0 | 16.43% | 2754.8 | 10.89% | motif file (matrix) |
svg |
22 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.452e+01 | 0.0000 | 44.0 | 4.73% | 517.0 | 2.04% | motif file (matrix) |
svg |
23 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-6 | -1.447e+01 | 0.0000 | 151.0 | 16.22% | 2752.1 | 10.88% | motif file (matrix) |
svg |
24 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.431e+01 | 0.0000 | 113.0 | 12.14% | 1913.0 | 7.56% | motif file (matrix) |
svg |
25 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-6 | -1.383e+01 | 0.0000 | 46.0 | 4.94% | 567.7 | 2.24% | motif file (matrix) |
svg |
26 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-5 | -1.349e+01 | 0.0000 | 38.0 | 4.08% | 432.3 | 1.71% | motif file (matrix) |
svg |
27 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-5 | -1.286e+01 | 0.0000 | 14.0 | 1.50% | 80.3 | 0.32% | motif file (matrix) |
svg |
28 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.285e+01 | 0.0000 | 39.0 | 4.19% | 462.4 | 1.83% | motif file (matrix) |
svg |
29 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-5 | -1.280e+01 | 0.0000 | 59.0 | 6.34% | 838.2 | 3.31% | motif file (matrix) |
svg |
30 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-5 | -1.232e+01 | 0.0001 | 148.0 | 15.90% | 2791.5 | 11.04% | motif file (matrix) |
svg |
31 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.222e+01 | 0.0001 | 48.0 | 5.16% | 641.7 | 2.54% | motif file (matrix) |
svg |
32 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-5 | -1.184e+01 | 0.0001 | 20.0 | 2.15% | 168.3 | 0.67% | motif file (matrix) |
svg |
33 |
| GFY(?)/Promoter/Homer | 1e-4 | -1.119e+01 | 0.0002 | 16.0 | 1.72% | 119.1 | 0.47% | motif file (matrix) |
svg |
34 |
| Sp1(Zf)/Promoter/Homer | 1e-4 | -1.106e+01 | 0.0002 | 66.0 | 7.09% | 1033.7 | 4.09% | motif file (matrix) |
svg |
35 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-4 | -1.086e+01 | 0.0002 | 49.0 | 5.26% | 696.7 | 2.75% | motif file (matrix) |
svg |
36 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.060e+01 | 0.0003 | 156.0 | 16.76% | 3075.3 | 12.16% | motif file (matrix) |
svg |
37 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-4 | -1.046e+01 | 0.0003 | 28.0 | 3.01% | 316.4 | 1.25% | motif file (matrix) |
svg |
38 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-4 | -9.908e+00 | 0.0005 | 98.0 | 10.53% | 1773.8 | 7.01% | motif file (matrix) |
svg |
39 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.637e+00 | 0.0006 | 36.0 | 3.87% | 478.2 | 1.89% | motif file (matrix) |
svg |
40 |
| NFY(CCAAT)/Promoter/Homer | 1e-4 | -9.531e+00 | 0.0007 | 54.0 | 5.80% | 837.8 | 3.31% | motif file (matrix) |
svg |
41 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-3 | -9.164e+00 | 0.0009 | 107.0 | 11.49% | 2015.7 | 7.97% | motif file (matrix) |
svg |
42 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -8.848e+00 | 0.0012 | 36.0 | 3.87% | 498.1 | 1.97% | motif file (matrix) |
svg |
43 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-3 | -8.839e+00 | 0.0012 | 67.0 | 7.20% | 1137.9 | 4.50% | motif file (matrix) |
svg |
44 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.809e+00 | 0.0012 | 120.0 | 12.89% | 2336.9 | 9.24% | motif file (matrix) |
svg |
45 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -8.806e+00 | 0.0012 | 68.0 | 7.30% | 1160.2 | 4.59% | motif file (matrix) |
svg |
46 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-3 | -8.704e+00 | 0.0013 | 44.0 | 4.73% | 660.9 | 2.61% | motif file (matrix) |
svg |
47 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-3 | -8.618e+00 | 0.0014 | 25.0 | 2.69% | 299.3 | 1.18% | motif file (matrix) |
svg |
48 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-3 | -8.486e+00 | 0.0016 | 73.0 | 7.84% | 1284.0 | 5.08% | motif file (matrix) |
svg |
49 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -8.312e+00 | 0.0018 | 35.0 | 3.76% | 493.0 | 1.95% | motif file (matrix) |
svg |
50 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-3 | -8.240e+00 | 0.0019 | 32.0 | 3.44% | 437.3 | 1.73% | motif file (matrix) |
svg |
51 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.153e+00 | 0.0021 | 72.0 | 7.73% | 1276.5 | 5.05% | motif file (matrix) |
svg |
52 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-3 | -7.982e+00 | 0.0024 | 10.0 | 1.07% | 70.3 | 0.28% | motif file (matrix) |
svg |
53 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.969e+00 | 0.0024 | 202.0 | 21.70% | 4380.1 | 17.32% | motif file (matrix) |
svg |
54 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-3 | -7.942e+00 | 0.0024 | 87.0 | 9.34% | 1623.1 | 6.42% | motif file (matrix) |
svg |
55 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-3 | -7.700e+00 | 0.0030 | 15.0 | 1.61% | 146.9 | 0.58% | motif file (matrix) |
svg |
56 |
| E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer | 1e-3 | -7.298e+00 | 0.0044 | 91.0 | 9.77% | 1750.8 | 6.92% | motif file (matrix) |
svg |
57 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-3 | -7.108e+00 | 0.0052 | 56.0 | 6.02% | 971.9 | 3.84% | motif file (matrix) |
svg |
58 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.859e+00 | 0.0066 | 177.0 | 19.01% | 3853.3 | 15.24% | motif file (matrix) |
svg |
59 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -6.660e+00 | 0.0079 | 100.0 | 10.74% | 1999.3 | 7.91% | motif file (matrix) |
svg |
60 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.651e+00 | 0.0079 | 19.0 | 2.04% | 232.3 | 0.92% | motif file (matrix) |
svg |
61 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -6.526e+00 | 0.0087 | 39.0 | 4.19% | 630.7 | 2.49% | motif file (matrix) |
svg |
62 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -6.285e+00 | 0.0109 | 70.0 | 7.52% | 1324.5 | 5.24% | motif file (matrix) |
svg |
63 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.219e+00 | 0.0115 | 11.0 | 1.18% | 104.9 | 0.41% | motif file (matrix) |
svg |
64 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.099e+00 | 0.0128 | 50.0 | 5.37% | 884.7 | 3.50% | motif file (matrix) |
svg |
65 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.070e+00 | 0.0129 | 39.0 | 4.19% | 647.9 | 2.56% | motif file (matrix) |
svg |
66 |
| YY1(Zf)/Promoter/Homer | 1e-2 | -6.041e+00 | 0.0131 | 13.0 | 1.40% | 139.4 | 0.55% | motif file (matrix) |
svg |
67 |
| p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer | 1e-2 | -6.021e+00 | 0.0132 | 6.0 | 0.64% | 36.9 | 0.15% | motif file (matrix) |
svg |
68 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.788e+00 | 0.0164 | 17.0 | 1.83% | 214.3 | 0.85% | motif file (matrix) |
svg |
69 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -5.755e+00 | 0.0167 | 12.0 | 1.29% | 127.1 | 0.50% | motif file (matrix) |
svg |
70 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.719e+00 | 0.0171 | 54.0 | 5.80% | 991.6 | 3.92% | motif file (matrix) |
svg |
71 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -5.639e+00 | 0.0182 | 78.0 | 8.38% | 1547.3 | 6.12% | motif file (matrix) |
svg |
72 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.608e+00 | 0.0185 | 163.0 | 17.51% | 3617.9 | 14.31% | motif file (matrix) |
svg |
73 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.434e+00 | 0.0218 | 60.0 | 6.44% | 1142.0 | 4.52% | motif file (matrix) |
svg |
74 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -5.412e+00 | 0.0219 | 28.0 | 3.01% | 440.3 | 1.74% | motif file (matrix) |
svg |
75 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-2 | -5.383e+00 | 0.0223 | 34.0 | 3.65% | 567.6 | 2.24% | motif file (matrix) |
svg |
76 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-2 | -5.376e+00 | 0.0223 | 21.0 | 2.26% | 300.2 | 1.19% | motif file (matrix) |
svg |
77 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.262e+00 | 0.0245 | 169.0 | 18.15% | 3801.8 | 15.03% | motif file (matrix) |
svg |
78 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.251e+00 | 0.0245 | 117.0 | 12.57% | 2511.8 | 9.93% | motif file (matrix) |
svg |
79 |
| ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.162e+00 | 0.0264 | 11.0 | 1.18% | 120.7 | 0.48% | motif file (matrix) |
svg |
80 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.161e+00 | 0.0264 | 88.0 | 9.45% | 1816.5 | 7.18% | motif file (matrix) |
svg |
81 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.133e+00 | 0.0265 | 57.0 | 6.12% | 1090.7 | 4.31% | motif file (matrix) |
svg |
82 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-2 | -4.969e+00 | 0.0308 | 90.0 | 9.67% | 1878.8 | 7.43% | motif file (matrix) |
svg |
83 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -4.966e+00 | 0.0308 | 9.0 | 0.97% | 91.0 | 0.36% | motif file (matrix) |
svg |
84 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-2 | -4.949e+00 | 0.0308 | 124.0 | 13.32% | 2709.8 | 10.71% | motif file (matrix) |
svg |
85 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.927e+00 | 0.0310 | 96.0 | 10.31% | 2026.3 | 8.01% | motif file (matrix) |
svg |
86 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -4.918e+00 | 0.0310 | 33.0 | 3.54% | 564.7 | 2.23% | motif file (matrix) |
svg |
87 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-2 | -4.748e+00 | 0.0363 | 46.0 | 4.94% | 860.2 | 3.40% | motif file (matrix) |
svg |
88 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -4.699e+00 | 0.0377 | 12.0 | 1.29% | 146.2 | 0.58% | motif file (matrix) |
svg |