Information for 4-TGGCTGSAAGCCAGAC (Motif 11)

G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
Reverse Opposite:
C T A G A G C T A G T C A C G T A C T G T C A G G A T C A G C T A C G T A T C G A T G C G T C A A C T G G T A C A G T C C T G A
p-value:1e-11
log p-value:-2.610e+01
Information Content per bp:1.707
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets57.8 +/- 25.3bp
Average Position of motif in Background50.1 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TGGCTGSAAGCCAGAC
TGGCAGNCTGCCAG--
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTGSAAGCCAGAC
TTGGCANNNTGCCAAG-
 A C G T G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGGCTGSAAGCCAGAC
TGGCACCATGCCAA--
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:TGGCTGSAAGCCAGAC-
-------ATGCCAGACN
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:10
Orientation:reverse strand
Alignment:TGGCTGSAAGCCAGAC--
----------CCAGACAG
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TGGCTGSAAGCCAGAC------
-----CAAATCCAGACATCACA
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGSAAGCCAGAC
TWGTCTGV---------
 A C G T G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:10
Orientation:reverse strand
Alignment:TGGCTGSAAGCCAGAC----
----------CCAGACRSVB
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTGSAAGCCAGAC--
YCAGGCWCAGTACCAGGCTC
 A C G T A C G T G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGGCTGSAAGCCAGAC
-NGCTN----------
 G A C T A C T G A C T G A G T C A C G T T A C G T A G C T G C A C T G A C A T G A G T C A G T C C G T A C T A G T C G A A G T C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T