Information for 2-GYTGTCCATGGTGCTG (Motif 3)

A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A C T A G A T G C C G T A A G T C G T A C G C T A G C A T A C T G A C T G C G T A A T G C C G T A C T A G G T A C
p-value:1e-19
log p-value:-4.501e+01
Information Content per bp:1.790
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif19.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.9 +/- 17.1bp
Average Position of motif in Background40.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---GYTGTCCATGGTGCTG--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---GYTGTCCATGGTGCTG-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
-----CCATTGTTTT-
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
----NCCATTGTTC--
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
-TTTTCCA--------
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
-----CCTTTGTT---
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
-----CCATTGTTYB-
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GYTGTCCATGGTGCTG--
-NNNTCCTTTGTTCTNNN
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GYTGTCCATGGTGCTG
-CTGTTCCTGG-----
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GYTGTCCATGGTGCTG
ATTTTCCATT------
 A C T G A G T C A C G T T A C G A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C G T A T C G A G T C A C G T A T C G
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T