Information for 9-CAACCATGCT (Motif 20)

T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T
Reverse Opposite:
C T G A A T C G A T G C C G T A A G C T C T A G C A T G A C G T A C G T A C T G
p-value:1e-7
log p-value:-1.820e+01
Information Content per bp:1.656
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif630.8
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets52.8 +/- 26.8bp
Average Position of motif in Background48.5 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAACCATGCT
CCAATCAA---
 A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAACCATGCT----
SCAGYCADGCATGAC
 A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAACCATGCT----
----CCTGCTGAGH
 T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAACCATGCT-
GCGACCACACTG
 A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAACCATGCT------
-TCNCCTGCTGNGNNN
 T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAACCATGCT------
-NNTCCTGCTGTGNNN
 T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CAACCATGCT-
------NGCTN
 T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAACCATGCT-----
GCAGCCAAGCGTGACN
 A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAACCATGCT-
GCNGCCATCTTG
 A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CAACCATGCT-
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C G T T G A C T G C A T G C A G T A C G A T C T C G A G C A T T A C G T A G C G A C T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A