Information for 13-TTGCTCTCCTTCTGGG (Motif 23)

C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G
Reverse Opposite:
A T G C G T A C G T A C C G T A C T A G C T G A C G T A T C A G C T A G T C G A T C A G C G T A C T A G T G A C T G C A G T C A
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.684
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif104.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets52.8 +/- 21.9bp
Average Position of motif in Background53.1 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG---
----TCNCCTGCTGNGNNN
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG---
----TNTCCTGCTGTGNNG
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG
----CCCCCTGCTGTG
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG----
---------TTCTTGGAAAN
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

STAT1/MA0137.3/Jaspar

Match Rank:5
Score:0.50
Offset:8
Orientation:forward strand
Alignment:TTGCTCTCCTTCTGGG---
--------TTTCCAGGAAA
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TTGCTCTCCTTCTGGG
ACCACTCTCGGTCAC--
 A C G T C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.50
Offset:8
Orientation:forward strand
Alignment:TTGCTCTCCTTCTGGG---
--------CTTCTGGGAAA
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG
--BNTGDCCTTG----
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:TTGCTCTCCTTCTGGG---
-----NGCTTTCTAGGAAN
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:TTGCTCTCCTTCTGGG------
------TCTTTCGAGGAATTTG
 C A G T A C G T A C T G A G T C A C G T A G T C A G C T A G T C A G T C C G A T A G C T A G T C A C G T A C T G A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G