Information for 2-CCAGCAATCC (Motif 11)

A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
Reverse Opposite:
C T A G C T A G T C G A C A G T A C G T T C A G G T A C A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.385e+01
Information Content per bp:1.842
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif143.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets44.9 +/- 24.4bp
Average Position of motif in Background50.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAATCC
GCCATAAATCA
 A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAGCAATCC--
CCATCAATCAAA
 A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCAATCC
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGCAATCC
TCATCAATCA
 A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAATCC
GGCCATAAATCA
 A C G T A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAGCAATCC---
TCACCCATCAATAAACA
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCAGCAATCC
CCWGGAATGY
 A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAATCC
GGCCATAAATCA
 A C G T A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAATCC-
GYCATCMATCAT
 A C G T A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCAGCAATCC
-NAACAAT--
 A G T C G T A C C G T A A C T G A G T C C G T A G T C A A G C T A G T C A G T C
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T