Information for 3-CTGTAGAGTG (Motif 9)

A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G
Reverse Opposite:
A G T C G C T A A G T C A G C T A T G C G C A T C T G A G T A C G T C A T A C G
p-value:1e-6
log p-value:-1.592e+01
Information Content per bp:1.722
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif8.27%
Number of Background Sequences with motif474.5
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets44.8 +/- 20.2bp
Average Position of motif in Background52.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTGTAGAGTG--
--BTBRAGTGSN
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG---
--CTTGAGTGGCT
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CTGTAGAGTG---
---TTGAGTGSTT
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG--
--CTYRAGTGSY
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGTAGAGTG---
---TTRAGTGSYK
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGTAGAGTG--
-TGTGGATTNNN
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T
A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGAGTG-
NNTGTGGATTSS
 A C G T A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGTAGAGTG-
--NTCAAGTGG
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGTAGAGTG---
---TTAAGTGCTT
 A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTAGAGTG
GCTGTG-----
 A C G T A T G C A C G T A C T G G A C T C G T A A T C G C T G A C T A G C G A T C T A G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T