Information for 4-CCGCVTGACCTBCCTC (Motif 8)

A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
Reverse Opposite:
A C T G C T G A A C T G A C T G T A C G G T C A A C T G A T C G A C G T A T G C G T C A A G T C A T C G A T G C C A T G A T C G
p-value:1e-7
log p-value:-1.754e+01
Information Content per bp:1.769
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets68.0 +/- 4.3bp
Average Position of motif in Background52.3 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC-
-----KGCCCTTCCCCA
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC
-----TGACCT-----
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCGCVTGACCTBCCTC----
TCCTCCTCCCCCTCCTCCTCC
 A C G T A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T A C G T A C G T A C G T
G A C T G A T C G A T C G A C T G A T C G A T C G A C T A G T C G A T C G A T C G A T C A G T C A G C T A G T C G T A C C G A T A T G C G T A C G A C T A G T C G A T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC
-----TGACCYCT---
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC
-CNNTTGACCTTTG--
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC
-----NNACTTGCCTT
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC
-----TGACCTTGAT-
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCGCVTGACCTBCCTC----
------GACCCCCCGCGAAG
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC-
-NNCNTGACCCCGCTCT
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CCGCVTGACCTBCCTC-
-----GGACCACCCACG
 A T G C G T A C T A C G A T G C T C A G C A G T A T C G C G T A A T G C A G T C A C G T A G T C A G T C A G T C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G