Information for 1-GAGACGGGAA (Motif 4)

A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A
Reverse Opposite:
A C G T A C G T A T G C A G T C A G T C A C T G A C G T A G T C A G C T A T G C
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif6.02%
Number of Background Sequences with motif96.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets42.4 +/- 28.0bp
Average Position of motif in Background50.4 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GAGACGGGAA
CWGGCGGGAA
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGACGGGAA---
-TGGCGGGAAAHB
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T A C G T A C G T
A C G T C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGACGGGAA--
-GGGCGGGAAGG
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T A C G T
A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

E2F4/MA0470.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGACGGGAA--
-GGGCGGGAAGG
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T A C G T
A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGACGGGAA-
BTKGGCGGGAAA
 A C G T A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGACGGGAA--
--GGCGGGAAAH
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T A C G T
A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGACGGGAA--
--GGCGGGAARN
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T A C G T
A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GAGACGGGAA
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGACGGGAA
CCAGACAG---
 A C G T A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GAGACGGGAA-
---ACCGGAAG
 A T C G C T G A A C T G G T C A A G T C A C T G A C T G T A C G G T C A G T C A A C G T
A C G T A C G T A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G