Information for 1-CCTCACDCAAHVVCCT (Motif 3)

A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C T G G C T A A C T G A C G T A C T G G T C A C T A G C T A G
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.773
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.4 +/- 10.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTCACDCAAHVVCCT
TBGCACGCAA------
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCACDCAAHVVCCT
-CTCACACAATGGCGC
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTCACDCAAHVVCCT
CCATCAATCAAA-----
 A C G T A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCTCACDCAAHVVCCT
--CCAATCAA------
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCTCACDCAAHVVCCT
---CACGCA-------
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTCACDCAAHVVCCT
ATTTGCATACAATGG---
 A C G T A C G T A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTCACDCAAHVVCCT
-ATCACCCCAT-----
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCTCACDCAAHVVCCT
CGAAGCACACAAAATA--
 A C G T A C G T A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCTCACDCAAHVVCCT
CGACCCAATCAACGGTG-
 A C G T A C G T A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTCACDCAAHVVCCT
-ATCACCCCAC-----
 A G T C A G T C A C G T A G T C G T C A G T A C C A G T A G T C C G T A C G T A G A C T T A C G T C G A A G T C A G T C A C G T
A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T