Information for 2-ACAAGCTAATGCT (Motif 2)

G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C T G A C G T
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.943
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 17.8bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACAAGCTAATGCT
-CAAGCTT-----
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ACAAGCTAATGCT-
----GCTAATCCCC
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACAAGCTAATGCT----
AATCGTTAATCCCTTTA
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ACAAGCTAATGCT
----GCTAATCC-
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACAAGCTAATGCT---
GNNAGCTAATCCCCCN
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Mecom/MA0029.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ACAAGCTAATGCT
AAGATAAGATAACA--
 A C G T A C G T A C G T G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ACAAGCTAATGCT-
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACAAGCTAATGCT
-TATGCWAATBAV
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ACAAGCTAATGCT--
-----NTAATKGTTT
 G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACAAGCTAATGCT
TTCAAGGTCAT---
 A C G T G T C A A G T C C G T A C G T A A C T G A G T C A C G T G T C A G T C A A C G T A C T G A G T C A G C T
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T A C G T A C G T A C G T