Information for 12-CGCTTCACTT (Motif 20)

A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T
Reverse Opposite:
C T G A C G T A C T A G A C G T C T A G G T C A C T G A A C T G A G T C A C T G
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.840
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif39.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets39.5 +/- 21.2bp
Average Position of motif in Background48.5 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCTTCACTT---
-GTTTCACTTCCG
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCTTCACTT
-GCTTCC---
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGCTTCACTT
TTCACGCATGAGTT
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CGCTTCACTT--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCTTCACTT
NGCTN-----
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CGCTTCACTT---
----CCACTTGAA
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGCTTCACTT--
----GCACTTAA
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGCTTCACTT---
---ACCACTTGAA
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGCTTCACTT--
---ACCACTTAA
 A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGCTTCACTT------
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G C T A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A