Information for 15-GGCAGGCAGGCAGGCA (Motif 28)

A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A T G C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A T G C
p-value:1e-4
log p-value:-1.059e+01
Information Content per bp:1.911
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.4 +/- 24.6bp
Average Position of motif in Background59.0 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAGGCA
-SCAGYCADGCATGAC
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGCAGGCA
TGGCAGNCTGCCAG---
 A C G T A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGGCAGGCA--
GGAAGGAAGGAAGGAAGG
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GGCAGGCAGGCAGGCA-
-------TBGCACGCAA
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAGGCAGGCAGGCA-
-GCAGCCAAGCGTGACN
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGCAGGCAGGCAGGCA-
------AAGGCAAGTGT
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGCAGGCAGGCAGGCA----
----NGTAGGTTGGCATNNN
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGGCAGGCA
TTGGCANNNTGCCAAG--
 A C G T A C G T A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GGCAGGCAGGCAGGCA
AAGGKGRCGCAGGCA----
 A C G T A C G T A C G T A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GGCAGGCAGGCAGGCA
--CACGCA--------
 A T C G C T A G A G T C C G T A A T C G C T A G A G T C G T C A T A C G A C T G A G T C C G T A A T C G C T A G A G T C C G T A
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T