Information for 3-TCCAGCCAGT (Motif 9)

A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
Reverse Opposite:
C T G A T G A C A G C T A C T G A C T G G T A C C G A T A C T G C T A G C G T A
p-value:1e-8
log p-value:-2.059e+01
Information Content per bp:1.860
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif3.65%
Number of Background Sequences with motif109.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets50.9 +/- 22.4bp
Average Position of motif in Background46.8 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TCCAGCCAGT
TTCCCGCCWG-
 A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCCAGCCAGT---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCCAGCCAGT--
ACTAGCCAATCA
 A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCCAGCCAGT
-CCAGACAG-
 A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCCAGCCAGT
-BCAGACWA-
 A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

E2F4/MA0470.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCCAGCCAGT
NNTTCCCGCCC--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
A G T C A G T C A G C T A G C T A T G C A T G C A G T C A C T G A T G C A T G C T G A C A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCCAGCCAGT
NYTTCCCGCC---
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCCAGCCAGT---
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCCAGCCAGT
VDTTTCCCGCCA--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
T A G C C G A T A C G T A G C T A G C T A G T C A T G C A G T C A C T G A T G C A T G C G C T A A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCCAGCCAGT
NCTTCCCGCCC--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C T G A G C T
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T