Information for 5-AATATTCATATYTAAA (Motif 8)

C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T A C G T C T G A C T A G C T G A C G A T G T C A G A C T A T C G G C T A C G T A C G A T C G T A A C G T A C G T
p-value:1e-9
log p-value:-2.111e+01
Information Content per bp:1.743
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 23.7bp
Average Position of motif in Background51.4 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATATTCATATYTAAA
CTAATATTGCTAAA----
 A C G T A C G T C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATATTCATATYTAAA
CTAATATTGCTAAA----
 A C G T A C G T C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AATATTCATATYTAAA
GAATATTCAT-------
 A C G T C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AATATTCATATYTAAA-
--CATTGTTATGCAAAT
 C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AATATTCATATYTAAA-
--CTTTGTTATGCAAAT
 C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AATATTCATATYTAAA
-AYATGYATATGCATR
 C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATATTCATATYTAAA
TNNATTATGCATANNTT--
 A C G T A C G T A C G T C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AATATTCATATYTAAA--
-------ATATTTACATA
 C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AATATTCATATYTAAA
GHATATKCAT-------
 A C G T C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:AATATTCATATYTAAA-
--------NATTCAAAT
 C G T A G T C A C G A T C G T A G C A T C G A T A T G C C G T A A C G T C G T A A G C T G A C T A G C T C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T