Information for 3-GTTATCCATTYATAGA (Motif 3)

T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T C G T A G A C T C T G A C G T A C G T A C G A T A T C G T C A G C G T A C A G T C T G A C T G A A G T C
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.752
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 8.3bp
Average Position of motif in Background71.3 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTATCCATTYATAGA
NNCATTCATTCATNNN
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

MEF2A/MA0052.3/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GTTATCCATTYATAGA
----TCTATTTTTAGA
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GTTATCCATTYATAGA
----TCTATTTATAGN
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTTATCCATTYATAGA
TNNATTATGCATANNTT--
 A C G T A C G T A C G T T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTTATCCATTYATAGA
----GCTATTTATAGC
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GTTATCCATTYATAGA
-----CCATATATGG-
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTTATCCATTYATAGA
GAATATTCAT-------
 A C G T T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTTATCCATTYATAGA
GHATATKCAT-------
 A C G T T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTTATCCATTYATAGA
ATTTTCCATT------
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTTATCCATTYATAGA
ATTTTCCATT------
 T C A G G A C T A G C T G C T A A C G T A G T C A T G C C G T A A C G T G A C T A G C T C G T A A C G T C G T A A C T G C G T A
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T