Information for 4-ASTCMATGGTWWT (Motif 10)

C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T
Reverse Opposite:
C T G A C G A T C G A T C G T A A G T C A G T C C G T A A C G T A C G T A C T G C T G A A T G C A C G T
p-value:1e-8
log p-value:-1.950e+01
Information Content per bp:1.874
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.6 +/- 21.0bp
Average Position of motif in Background44.5 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ASTCMATGGTWWT
---CCATTGTTC-
 C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ASTCMATGGTWWT-----
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ASTCMATGGTWWT----
-TTCAATTGTTCTAAAA
 C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ASTCMATGGTWWT--
ANNTCCATTGTTCNNN
 A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ASTCMATGGTWWT
---CCATTGTTYB
 C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ASTCMATGGTWWT---
ANNTCTATTGTTCNNNA
 A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ASTCMATGGTWWT
HNRAATCAAT------
 A C G T A C G T A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ASTCMATGGTWWT---
----TATGCWAATBAV
 C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ASTCMATGGTWWT
CTCACACAATGGCGC-
 A C G T A C G T A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ASTCMATGGTWWT-
NNATNAATTGTTTNN
 A C G T C G T A A T C G A G C T A G T C G T C A C G T A A C G T A C T G A C T G A C G T C G T A C G T A A G C T A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T