Information for 6-AGCHCAGCCACAGCAA (Motif 7)

C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A
Reverse Opposite:
A C G T A C G T A C T G A G T C A C G T C T A G A C G T A C T G A T C G A G T C C G A T A C T G C G T A C T A G A G T C A C G T
p-value:1e-13
log p-value:-3.206e+01
Information Content per bp:1.830
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 23.1bp
Average Position of motif in Background81.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA----
-----CCGCATAGCAACGGA
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AGCHCAGCCACAGCAA
--------CACAGN--
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA----
-----TACCATAGCAACGGT
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA---
-------SCCTAGCAACAG
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGCHCAGCCACAGCAA
----AAACCACAGAN-
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA---
----ATGTCACAACAACAC
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA----
---AATCGCACTGCATTCCG
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.54
Offset:8
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA----
--------CACAGCAGGGGG
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA----
-----GAGCACAGCAGGACA
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGCHCAGCCACAGCAA
---CCAGGAACAG---
 C G T A A C T G A G T C G C A T T G A C C G T A A C T G A T G C G T A C C G T A A G T C C G T A A C T G A G T C C G T A T G C A
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T