Information for 17-AGAGAGAGAGAGA (Motif 40)

C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
Reverse Opposite:
A C G T T G A C A G C T A G T C A G C T A G T C A G C T A G T C A G C T T A G C A G C T A G T C A G C T
p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.774
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif69.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets37.9 +/- 23.1bp
Average Position of motif in Background45.2 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGAGAGAGA
AGAAAGTGAAAGTGA
 A C G T A C G T C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAGAGA--
AGATGKDGAGATAAG
 C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A A C G T A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAGAGA
-GAAAGTGAAAGT
 C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAGAGAGA-
NNNACCGAGAGTNNN
 A C G T C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

IRF1/MA0050.2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGAGAGAGA------
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAGAGA
-GAAAGTGAAAGT
 C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGAGAGAGAGAGA
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAGAGAGA-
TTGACCGAGAATTCC
 A C G T C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAGAGA
AGAGGAAGTG---
 C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAGAGA
-GRAASTGAAAST
 C T G A C T A G C T G A A C T G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C T G G T C A
A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T