Information for 2-GCATGCTYSTTTGTCA (Motif 3)

A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A G T A C C G T A C T G A C T G A T A C G T C A G C T G A A C T G G T A C G T C A A C G T A C T G T A G C
p-value:1e-19
log p-value:-4.459e+01
Information Content per bp:1.716
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.5 +/- 25.8bp
Average Position of motif in Background64.4 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.60
Offset:10
Orientation:forward strand
Alignment:GCATGCTYSTTTGTCA--
----------YTGWCADY
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCATGCTYSTTTGTCA
--AGGVNCCTTTGT--
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.57
Offset:11
Orientation:forward strand
Alignment:GCATGCTYSTTTGTCA---
-----------TGTCANYT
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA-
----------NTGTCAN
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA-
---------CTTGGCAA
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA----
----ANTCCTTTGTCTNNNN
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA--
--------NNTTGGCANN
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GCATGCTYSTTTGTCA
-------CCWTTGTY-
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA-
---------CCTGTCAA
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCATGCTYSTTTGTCA----
---TNNTCCTTTGTTCTNNT
 A C T G G T A C G T C A C A G T C A T G A G T C A G C T A G T C A T G C A G C T A G C T A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T