Information for 11-ACCCATTGAA (Motif 28)

C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A
Reverse Opposite:
A C G T A C G T A G T C G T C A C G T A A C G T A C T G A C T G A C T G A C G T
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.898
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif29.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.1 +/- 18.0bp
Average Position of motif in Background53.1 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACCCATTGAA----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACCCATTGAA
GGCCATTAAC
 C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACCCATTGAA
CGCCCCCTGACA
 A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ACCCATTGAA
ACCGATTAG-
 C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCCATTGAA-
CCACCTGTTGCAT
 A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACCCATTGAA---
NNCATTCATTCATNNN
 A C G T A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACCCATTGAA----
AGAGCCATAAAATTCG
 A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACCCATTGAA-----
CGACCCAATCAACGGTG
 A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACCCATTGAA
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACCCATTGAA-
--CCATTGTTC
 C G T A A G T C A G T C A G T C C G T A A C G T A C G T C T A G G T C A C G T A A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C