Information for 10-STCAWTCACA (Motif 27)

T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A C G A T A C G T A T C G T C G A A T C G
p-value:1e-9
log p-value:-2.202e+01
Information Content per bp:1.736
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif9.56%
Number of Background Sequences with motif1909.7
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets54.0 +/- 24.2bp
Average Position of motif in Background49.4 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:STCAWTCACA----
----TTMACACCTT
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:STCAWTCACA--
CTCATTTGCATW
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:STCAWTCACA---
---ATTAACACCT
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:STCAWTCACA-
-CAAATCACTG
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:STCAWTCACA--
BTGABTGACAGS
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:STCAWTCACA--
BTVATTWGCATA
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:STCAWTCACA--
NTGATTGACAGN
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:STCAWTCACA-----
AAAAATAACAAACGG
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:STCAWTCACA
-YCATTAMC-
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:STCAWTCACA---
-----TCACACCT
 T A G C A G C T A T G C C G T A G C A T A C G T G T A C T G C A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T