Information for 9-AAAGGGCACAACA (Motif 10)

C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T C T A G A C G T A C T G A G T C A G T C A G T C A C G T A C G T A G C T
p-value:1e-9
log p-value:-2.280e+01
Information Content per bp:1.882
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.4 +/- 15.4bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AAAGGGCACAACA----
--ATGTCACAACAACAC
 C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAAGGGCACAACA-----
-AACACCAAAACAAAGGA
 C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAAGGGCACAACA-----
--ATATCAAAACAAAACA
 C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAAGGGCACAACA---
-CAAACAACAACACCT
 C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAAGGGCACAACA
-AAGGTCAC----
 C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGGCACAACA
ANGNAAAGGTCA-----
 A C G T A C G T A C G T A C G T C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAAGGGCACAACA
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AAAGGGCACAACA
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAAGGGCACAACA
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAGGGCACAACA
CAAAGGTCAG----
 A C G T C T G A C G T A C G T A C T A G C T A G C T A G A G T C C G T A A G T C C G T A C G T A A G T C C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T