Information for 6-CGCAGCGGCGACA (Motif 5)

A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T G T A C A C T G A T G C A G T C A C T G A G T C A C G T A C T G A G T C A C T G
p-value:1e-11
log p-value:-2.679e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 25.2bp
Average Position of motif in Background60.4 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CGCAGCGGCGACA
CGCAGCTGCG---
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCGGCGACA-
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCAGCGGCGACA
NNACAGCTGC----
 A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGCAGCGGCGACA
AGCAGCTGCTNN-
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGCAGCGGCGACA
AGCAGCTGCT---
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGCAGCGGCGACA
-NCAGCTGCTG--
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CGCAGCGGCGACA
--CAGCC------
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCGGCGACA
NNGCAGCTGTC---
 A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGCAGCGGCGACA
CACAGN-------
 A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGCAGCGGCGACA
NNVVCAGCTGBN---
 A C G T A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G A T C G A G T C C A T G C G T A A T G C C G T A
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T