Information for 6-GTAACAYWCA (Motif 27)

A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
Reverse Opposite:
C A G T A C T G C G T A C T A G A C G T A C T G A G C T A G C T C G T A A G T C
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.731
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif7.80%
Number of Background Sequences with motif799.2
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets52.7 +/- 28.4bp
Average Position of motif in Background49.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC12/MA0906.1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTAACAYWCA
GGTCGTAAAAA---
 A C G T A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTAACAYWCA
AGTCGTAAAAA---
 A C G T A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTAACAYWCA
AGGTGHCAGACA
 A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTAACAYWCA
GCTCGTAAAAA---
 A C G T A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTAACAYWCA
AATGTATCAAT--
 A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTAACAYWCA
GTCGTAAAAA---
 A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTAACAYWCA
GGTCGTAAAAT---
 A C G T A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTAACAYWCA
GGTCGTAAAATT--
 A C G T A C G T A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTAACAYWCA-
AGGTGNCAGACAG
 A C G T A C G T A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTAACAYWCA
TTGACAG---
 A C T G A C G T C T G A C T G A G T A C C G T A G A T C G C A T G T A C G T C A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T