Information for 1-GCCACAGCATGCCCYA (Motif 1)

A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
Reverse Opposite:
G A C T C T G A C T A G A C T G A C T G A G T C T C G A A C G T A C T G A T G C A C G T A C T G A G C T A C T G A C T G T G A C
p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.4 +/- 20.7bp
Average Position of motif in Background26.6 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCATGCCCYA
GAGCACAGCAGGACA--
 A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCATGCCCYA
CCACACAGCAGGAGA--
 A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGCATGCCCYA
AAACCACAGAN-------
 A C G T A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGCATGCCCYA
NWAACCACADNN-------
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCACAGCATGCCCYA
ATTTCCCAGVAKSCY---
 A C G T A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCATGCCCYA
CCACACAGCAGGAGA--
 A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGCATGCCCYA
AAACCACAGC--------
 A C G T A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCATGCCCYA
ATCCAC-----------
 A C G T A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCACAGCATGCCCYA
-DCTCAGCAGG-----
 A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCACAGCATGCCCYA
-CCCCCTTGGGCCCC-
 A C T G A G T C A G T C C T G A A G T C G T C A A T C G T A G C C G T A A C G T C T A G A G T C A G T C A G T C A G C T C G T A
A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T