Information for 5-RYRGGGCTSAAAAAAA (Motif 6)

C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A G T C A G T C A G T C A G C T C T G A A G C T
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.888
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.6 +/- 25.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0116.1_Elf3_2/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA------
-----GTTCAAAAAAAAAATTC
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA------
-----GTTAAAAAAAAAAATTA
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA--
----TACTGGAAAAAAAA
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA--
---AGCCGAAAAAAAAAT
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RYRGGGCTSAAAAAAA
TTAGAGGGATTAACAAT-
 A C G T A C G T C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA
-----GCTCGTAAAAA
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RYRGGGCTSAAAAAAA
-----CCYMATAAAA-
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:RYRGGGCTSAAAAAAA
------CCAATAAAAA
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--RYRGGGCTSAAAAAAA
CTCCAGGGGTCAATTGA-
 A C G T A C G T C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:RYRGGGCTSAAAAAAA-
-----GCTAAAAATAGC
 C T G A A G C T C T G A A C T G A C T G A C T G A G T C A C G T A T C G C G T A C G T A T C G A C G T A C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C