Information for 6-MCTAATTTDC (Motif 27)

G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C
Reverse Opposite:
A C T G G C A T C G T A C G T A T C G A A G C T A G C T C G T A A T C G A C G T
p-value:1e-6
log p-value:-1.478e+01
Information Content per bp:1.742
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif204.8
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets52.1 +/- 26.1bp
Average Position of motif in Background48.6 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0098.1_Lhx8/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---MCTAATTTDC----
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

POU1F1/MA0784.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:MCTAATTTDC-----
-CTAATTTGCATATT
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

PH0097.1_Lhx6_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---MCTAATTTDC----
TCCACTAATTAGCGGTT
 A C G T A C G T A C G T G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

RAX/MA0718.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:MCTAATTTDC
NTTAATTGNN
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C
C T A G G A C T G C A T C G T A C G T A C A G T C G A T C T A G T C A G A G T C

PH0131.1_Pax4/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---MCTAATTTDC----
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C

LHX2/MA0700.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MCTAATTTDC
ACTAATTAAC
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

PAX4/MA0068.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:MCTAATTTDC
-CTAATTAG-
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C
A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T

PH0050.1_Hoxa3/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:MCTAATTTDC----
ACTAATTANCNCNA
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

PH0154.1_Prrx1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---MCTAATTTDC----
GTAACTAATTAACTACT
 A C G T A C G T A C G T G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MCTAATTTDC
GCTAATTGGC
 G T C A A T G C A C G T C T G A T C G A A G C T C G A T A C G T C G T A A G T C
T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C