Information for 4-MCAACAGGGGARAKCA (Motif 23)

G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
Reverse Opposite:
A C G T A C T G T G A C A C G T G A C T A G C T A G T C A G T C A G T C G T A C A C G T A C T G A C G T C A G T A C T G C A G T
p-value:1e-7
log p-value:-1.782e+01
Information Content per bp:1.703
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.6 +/- 28.3bp
Average Position of motif in Background85.4 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--MCAACAGGGGARAKCA
ATGCAACAGGTGG-----
 A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--MCAACAGGGGARAKCA
GAGCAACAGGTGGTT---
 A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-MCAACAGGGGARAKCA
CACAGCAGGGGG-----
 A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----MCAACAGGGGARAKCA
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---MCAACAGGGGARAKCA
NWAACCACADNN-------
 A C G T A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--MCAACAGGGGARAKCA
TGCGCATAGGGGAGGAG-
 A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--MCAACAGGGGARAKCA
AAACCACAGC--------
 A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-MCAACAGGGGARAKCA
ATCCACAGGTGCGAAAA
 A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--MCAACAGGGGARAKCA
AAACCACAGAN-------
 A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----MCAACAGGGGARAKCA
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T G T A C A G T C G C T A C G T A G T A C C G T A A C T G C T A G C T A G A C T G C T G A C T A G C G T A A C G T G T A C G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T