Information for 5-GAGCTMACCC (Motif 11)

C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
Reverse Opposite:
A T C G A C T G A T C G A C G T A C G T C G T A A C T G A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.828
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif30.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.9 +/- 29.9bp
Average Position of motif in Background52.7 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGCTMACCC
--GCTAATCC
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTMACCC----
GNNAGCTAATCCCCCN
 A C G T A C G T C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGCTMACCC
CAGCC-----
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGCTMACCC
AAGGTCAC--
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCTMACCC
-AGATAAGA-
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTMACCC
NNGAGATAAGA-
 A C G T A C G T C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCTMACCC
TRAGGTCA---
 A C G T C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGCTMACCC
NAGATAAGNN
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGCTMACCC
-AGATAASR-
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C
A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGCTMACCC--
--GCTAATCCCC
 C T A G C G T A A C T G A G T C A C G T G T C A C G T A T A G C G T A C A T G C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C