Information for 11-GCATATATGG (Motif 42)

A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A A G C T T C G A C A G T C T G A A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.895e+01
Information Content per bp:1.864
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets40.7 +/- 25.8bp
Average Position of motif in Background49.0 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GCATATATGG---
TGACCATATATGGTCA
 A C G T A C G T A C G T A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCATATATGG--
CCATATATGGNA
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T A C G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GCATATATGG--
TNCCATATATGGNA
 A C G T A C G T A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

Twist2/MA0633.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCATATATGG-
-NACATATGGN
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T
A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCATATATGG
CCATATATGG
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

Bhlha15/MA0607.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCATATATGG
--ACATATGG
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G
A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCATATATGG---
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCATATATGG--
--NNATAAGGNN
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Atoh1/MA0461.2/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCATATATGG-
-AACATATGTT
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T
A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

Neurog1/MA0623.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCATATATGG-
-ACCATATGGT
 A C T G A G T C C G T A A G C T G T C A A G C T C T G A A C G T A C T G A C T G A C G T
A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T