Information for 12-RCTCTGGSCACAG (Motif 31)

C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
Reverse Opposite:
A T G C C G A T A C T G A C G T C T A G A T G C A T G C A G T C C T G A T C A G C T G A A T C G G A C T
p-value:1e-8
log p-value:-2.055e+01
Information Content per bp:1.677
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif429.1
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets52.3 +/- 24.8bp
Average Position of motif in Background48.6 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:RCTCTGGSCACAG-
--------CACAGN
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RCTCTGGSCACAG--
----AAACCACAGAN
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:RCTCTGGSCACAG-
----AAACCACAGC
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RCTCTGGSCACAG
---CCAGGAACAG
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RCTCTGGSCACAG
---NAAACCACAG
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:RCTCTGGSCACAG--
---NWAACCACADNN
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:RCTCTGGSCACAG
GCTCCGCCCMCY-
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RCTCTGGSCACAG
-SCCTAGCAACAG
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RCTCTGGSCACAG
WDNCTGGGCA---
 C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---RCTCTGGSCACAG
TGGACTTTGNNCTNTG
 A C G T A C G T A C G T C T G A A T G C A G C T A G T C A G C T C T A G T A C G T A C G A G T C G T C A G T A C C G T A A T C G
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G