Information for 7-CCAAAATCCCATC (Motif 26)

A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
Reverse Opposite:
A C T G C T G A A G C T C T A G A C T G A C T G T G C A G C A T A C G T A C G T A C G T A C T G A T C G
p-value:1e-9
log p-value:-2.197e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 35.1bp
Average Position of motif in Background62.1 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAAAATCCCATC-
GGCAAAAGTCCAATAA
 A C G T A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0167.1_Sox13_2/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCAAAATCCCATC------
--ANNTNCCCACCCANNAC
 A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCAAAATCCCATC---
NNNTCCATCCCATAANN
 A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCAAAATCCCATC
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAAAATCCCATC
GGAAATTCCC---
 A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAAAATCCCATC
GGAAATTCCC---
 A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CCAAAATCCCATC
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAAAATCCCATC
GGAAATCCCC---
 A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAAAATCCCATC
GGGGTCAAAGTCCAAT-
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCAAAATCCCATC
GGGAAATCCCCN--
 A C G T A T G C A G T C C G T A C G T A G T C A C G T A A C G T A G T C A G T C A G T C C T G A A G C T A G T C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T